March 12, 2021

Publications

TriCEM Publications

 

Publications 2021Read More
Rosinger AY, Bethancourt H, Swanson ZS, Nzunza R, Saunders J, Dhanasekar S, Kenney WL, Hu K, Douglass MJ, Ndiema E, Braun DR, and Pontzer H. (2021) Drinking water salinity is associated with hypertension and hyperdilute urine among Daasanach pastoralists in Northern Kenya. Science of the Total Environment 770: 144667.Link
Sumner KM, Freedman E, Mangeni JN, Obala AA, Abel L, Edwards JK, Emch M, Meshnick SR, Pence BW, Prudhomme-O'Meara W, and Taylor SM. (2021) Exposure to diverse Plasmodium falciparum genotypes shapes the risk of symptomatic malaria in incident and persistent infections: A longitudinal molecular epidemiologic study in Kenya. Clinical Infectious Diseases.Link
Meredith H, Kularatna S, Nagaro K, Nagahawatte A, Bodinayake C, Kurukulasooriya R, Wijesingha N, Harden LB, Piyasiri B, Hammouda A, Wiegmann B, Nicholson BP, Joyce M, Woods CW, van Vliet AM, Thakur S, and Tillekeratne LG. (2021) Colonization with multidrug-resistant Enterobacteriaceae among infants: an observational study in southern Sri Lanka. Antimicrobial Resistance & Infection Control 10: 72.Link
Anderson JA, Johnston RA, Lea AJ, Campos FA, Voyles TN, Akinyi MY, Alberts SC, Archie EA, and Tung J. (2021) High social status males experience accelerated epigenetic aging in wild baboons. eLife 10: e66128.Link
Somarelli JA. (2021) The hallmarks of cancer as ecologically driven phenotypes. Frontiers in Ecology and Evolution 9: 661583.Link

 

Publications 2020Read More
Antonia AL and Ko D. (2020) Leishmaniasis: A spectrum of diseases shaped by evolutionary pressures across diverse life cycle. Evolution, Medicine, and Public Health 2020(1): 139-140.Link
Somarelli JA, Gardner H, Cannataro VL, Gunady EF, Boddy AM, Johnson NA, Fisk JN, Gaffney SG, Chuang JH, Li S, Ciccarelli FD, Panchenko AR, Megquier K, Kumar S, Dornburg A, DeGregori J, and Townsend JP. (2020) Molecular biology and evolution of cancer: From discovery to action. Molecular Biology and Evolution 37(2): 320-326.Link
Somarelli JA, Boddy A, Gardner HL, DeWitt SB, Tuohy J, Megquier K, Sheth MU, Hsu SD, Thorne JL, London CA, and Eward WC. (2020) Improving cancer drug discovery by studying cancer across the tree of life. Molecular Biology and Evolution 37(1): 11-17.Link
Amoroso C, Hanna E, LaBar KS, Schaich Borg J, Sinnott-Armstrong W, and Zucker NL. (2020) Disgust theory through the lens of psychiatric medicine. Clinical Psychological Science 8(1): 3-24.Link
Rao SR, Somarelli JA, Altunel E, Selmic LE, Byrum M, Sheth MU, Cheng S, Ware KE, Kim SY, Prinz JA, Devos N, Corcoran DL, Moseley A, Soderblom E, Hsu SD, and Eward WC. (2020) From the clinic to the bench and back again in one dog year: How a cross-species pipeline to identify new treatments for sarcoma illuminates the path forward in precision medicine. Frontiers in Oncology 10: 117.Link
Hao Y, Lee HJ, Baraboo M, Burch K, Maurer T, Somarelli JA, and Conant GC. (2020) Baby genomics: tracing the evolutionary changes that gave rise to placentation. Genome Biology and Evolution.Link
Ryser MD, Mallo D, Hall A, Hardman T, King LM, Tatishchev S, Sorribes IC, Maley CC, Marks JR, Hwang ES, and Shibata D. (2020) Minimal barriers to invasion during human colorectal tumor growth. Nature Communications 11(1280).Link
Snyder-Mackler N, Burger JR, Gaydosh L, Belsky D, Noppert GA, Campos FA, Bartolomucci A, Yang YC, Aiello AE, O'Rand A, Harris KM, Shively CA, Alberts SC, and Tung J. (2020) Social determinants of health and survival in humans and other animals. Science 368(6493): eaax9553.Link
McGirr JA and Martin CH. (2020) Ecological divergence in sympatry causes gene misexpression in hybrids. Molecular Ecology.Link
McGirr JA and Martin CH. (2020) Few fixed variants between trophic specialist pupfish species reveal candidate cis-regulatory alleles underlying rapid craniofacial divergence. Molecular Biology and Evolution.Link
Bethancourt HJ, Swanson ZS, Nzunza R, Huanca T, Conde E, Kenney WL, Young SL, Ndiema E, Braun D, Pontzer H, and Rosinger AY. (2020) Hydration in relation to water insecurity, heat index, and lactation status in two small-scale populations in hot-humid and hot-arid environments. American Journal of Human Biology.Link
Somarelli JA, Rupprecht G, Altunel E, Flamant EM, Rao S, Sivaraj D, Lazarides A, Hoskinson SM, Sheth MU, Cheng S, Kim SY, Ware KE, Agarwal A, Cullen MM, Selmic LE, Everitt JI, McCall SJ, Eward C, Eward WC, and Hsu DS. (2020) A comparative oncology drug discovery pipeline to identify and validate new treatments for osteosarcoma. Cancers 12: 3335.Link
Pless E, Hopperstad KA, Ledesma N, Dixon D, Henke JA, and Powell JR. (2020) Sunshine versus gold: the effect of population age on genetic structure of an invasive mosquito. Ecology and Evolution 10: 9588-9599.Link
Anderson JA, Vilgalys TP, and Tung J. (2020) Broadening primate genomics: new insights into the ecology and evolution of primate gene regulation. Current Opinions in Genetics and Development 62: 16-22.Link
Balbin MM, Hull D, Guest C, Nichols L, Dunn R, Hull D, and Thakur S. (2020) Antimicrobial resistance and virulence factors profile of Salmonella spp. and Escherichia coli isolated from different environments exposed to anthropogenic activities. Journal of Global Antimicrobial Resistance 22: 578-583.Link

 

Publications 2019Read More
McGirr JA and Martin CH. (2019) Hybrid misregulation in multiple developing tissues within a recent adaptive radiation of Cyprinodon pupfishes. PLoS One.Link
O'Keeffe KR and Jones CD. (2019) Challenges and solutions for analysing dual RNA-seq data for non-model host-pathogen systems. Methods in Ecology and Evolution 10(3): 401-414.Link
Reese AT, Kartzinel TR, Petrone BL, Turnbaugh PJ, Pringle RM, and David LA. (2019) Using DNA metabarcoding to evaluate the plant component of human diets: a proof of concept. mSystems.Link
Bornbusch S and Grube A. (2019) Antibiotic resistance in wildlife population and wild ecosystems. Plan A.Link
Jolly MK, Ware KE, Xu S, Gilja S, Shetler S, Yang Y, Wang X, Austin RG, Runyambo D, Hish AJ, DeWitt SB, George JT, Kreulen T, Boss M, Lazarides AL, Kerr DL, Gerber DG, Sivaraj D, Armstrong AJ, Dewhirst MW, Eward WC, Levine H, and Somarelli JA. (2019) E-cadherin represses anchorage-independent growth in sarcomas through both signaling and mechanical mechanisms. Molecular Cancer Research 17(6): 1391-1402.Link
Xu S, Ware KE, Ding Y, Kim SY, Sheth MU, Rao S, Chan W, Armstrong AJ, Eward WC, Jolly MK, and Somarelli JA. (2019) An integrative systems biology and experimental approach identifies convergence of epithelial plasticity, metabolism, and autophagy to promote chemoresistance. Journal of Clinical Medicine 8(2): 205.Link
Hopperstad KA, Reiskind MH, Labadie PE, and Reiskind MOB. (2019) Patterns of genetic divergence among populations of Aedes aegypti L. (Diptera: Culicidae) in the southeastern USA. Parasites & Vectors 12: 511.Link
Nelson CS, Vera Cruz D, Su M, Xie G, Vandergrift N, Pass RF, Forman M, Diener-West M, Koelle K, Arav-Boger R, and Permar SR. (2019) Intrahost dynamics of human cytomegalovirus variants acquired by seronegative glycoprotein B vaccinees. Journal of Virology 93(5).Link
Pandey A and Dawson DE. (2019) The shapes of virulence to come. Evolution, Medicine, and Public Health 2019(1): 3.Link
Ryan CP. (2019) Tandem repeat disorders. Evolution, Medicine, and Public Health 2019(1): 17.Link
Salazar-Tortosa D and Fernández-Rhodes L. (2019) Obesity and climate adaptation. Evolution, Medicine, and Public Health 2019(1): 104-105.Link
Spence Beaulieu MR. (2019) The role of parasite manipulation in vector-borne diseases. Evolution, Medicine, and Public Health 2019(1): 106-107.Link
Smith TC and Hechtel L. (2019) Erectile dysfunction and the baculum. Evolution, Medicine, and Public Health 2019(1): 147-148.Link

 

Publications 2018Read More
Lea AJ, Vockley CM, Johnston RA, Del Carpio CA, Barreiro LB, Reddy TE, and Tung J. (2018) Genome-wide quantification of the effects of DNA methylation on human gene regulation. eLife 7: e37513.Link
Hanna E and Sinnott-Armstrong W. (2018) Disgusting discrepancies: moral disgust as threat compensation. In: The Moral Psychology of Disgust (Rowman & Littlefield), ed. Victor Kumar and Nina Strohminger.
Lea AJ, Tung J, Archie EA, and Alberts SC. (2018): Developmental plasticity: Bridging research in evolution and human health. Evolution, Medicine and Public Health 2017(1): 162-175.Link
Niemuth JN, Harms CA, Macdonald JM, and Stoskopf MK. (2018) Propylene glycol in free-ranging green sea turtle plasma. Journal of Fish and Wildlife Management 9(2): 617-623.Link
Qurollo BA, Larsen PA, Rakotondrainbe HH, Mahefarisoa K, Rajaonarivelo T, Razafindramanana J, Breitschwerdt EB, Junge RE, and Williams CV. (2018) Molecular surveillance of novel tick-borne organisms in Madagascar's lemurs. Ticks and Tick Borne Diseases 9(3): 672-677.Link
Arthur A, Terman A, Kurzontkowski C, Keene K, Babatunde T, and Summers K. (2018) Molecular evolution of genes associated with preeclampsia: genetic conflict, antagonistic coevolution and signals of selection. Journal of Evolutionary Medicine 6: 236038.Link
Krulikas LJ, McDonald IM, Lee B, Okumu DO, East MP, Gilbert TSK, Herring LE, Golitz BT, Wells CI, Axtman AD, Zuercher WJ, Willson TM, Kireev D, Yeh JJ, Johnson GL, Baines AT, and Graves LM. (2018) Application of integrated drug screening/kinome analysis to identify inhibitors of gemcitabine-resistant pancreatic cancer cell growth. SLAS Discovery 23(8): 850-861.Link
Lea AJ, Akinyi MY, Nyakundi R, Mareri P, Nyundo F, Kariuki T, Alberts SC, Archie EA, and Tung J. (2018) Dominance rank-associated gene expression is widespread, sex-specific, and a precursor to high social status in wild male baboons. PNAS 115(52): E12163-E12171.Link
Nelson CS, Huffman T, Jenks JA, Cisneros de la Rosa E, Xie G, Vandergrift N, Pass RF, Pollara J, and Permar SR. (2018) HCMV glycoprotein B subunit vaccine efficacy mediated by nonneutralizing antibody effector functions. PNAS 115(24): 6267-6272.Link
Manus MB. (2018) Evolutionary mismatch. Evolution, Medicine, and Public Health 2018(1): 190-191.Link

 

Publications 2017Read More
Lea AJ, Durst PAP, Vilgalys TP, and Tung J. (2017) Maximizing ecological and evolutionary insight from bisulfite sequencing data sets. Nature Ecology and Evolution 1: 1074-1083.Link
O'Keeffe K, Carbone I, Jones CD, and Mitchell CE. (2017) Plastic potential: how the phenotypes and adaptations of pathogens are influenced by microbial interactions within plants. Current Opinion in Plant Biology 38: 78-83.Link
Sinnott-Armstrong W and Katz S. (2017) Gross! Ethical Issues Surrounding Disgust. Lulu Press.
Smyth K, Morton C, Mathew A, Karuturi S, Haley C, Zhang M, Holzknecht ZE, Swanson C, Lin SS, and Parker W. (2017) Production and use of Hymenolepis diminuta cysticercoids as anti-inflammatory therapeutics. Journal of Clinical Medicine 6(10): 98.Link
Wcisel DJ, Ota T, Litman GW, and Yoder JA. (2017) Spotted gar and the evolution of innate immune receptors. Journal of Experimental Zoology B 328(7): 666-684.Link
Young HS, Wood CL, Kilpatrick AM, Lafferty KD, Nunn CL, and Vincent JR. (2017) Introduction: Conservation, biodiversity and infectious disease: Scientific evidence and policy implications. Philosophical Transactions of the Royal Society B 372(1722): 20160124.Link
Zucker NL, Arena C, Dable C, Hill J, Hubble C, Sohl E, and Yoon J. (2017) Selective eating: Normative developmental phase or clinical condition? In: The Oxford Handbook of Eating Disorders, 2nd Edition (Oxford, UK), ed. W Stewart Agras.
Kamiya T, Greischar MA, and Mideo N. (2017) Epidemiological consequences of immune sensitisation by pre-exposure to vector saliva. PLoS Neglected Tropical Diseases 11(10): e0005956.Link
Shragai T, Telsa B, Murdock C, and Harrington LC. (2017) Zika and chikungunya: mosquito-borne viruses in a changing world. Annals of the New York Academy of Sciences 1399(1): 61-77.Link
Somarelli JA, Ware KE, Kostadinov R, Robinson JM, Amri H, Abu-Asab M, Fourie N, Diogo R, Swofford D, and Townsend JP. (2017) PhyloOncology: Understanding cancer through phylogenetic analysis. Biochimica et Biophysica Acta 1867(2): 101-108.Link

 

Publications 2016Read More
Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Cañestro C, Sydes J, Beaudry FE, Sun Y, Hertel J, Beam MJ, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SM, Aken B, Yandel M, Schneider I, Yoder JA, Volff JN, Meyer A, Amemiya CT, Venkatesh B, Holland PW, Guiguen Y, Bobe J, Shubin NH, Di Palma F, Alfo Ldi J, Lindblad-Toh K, and Pastlethwait JH. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics 48(6): 700.Link
McConnell SC, Hernandez KM, Wcisel DJ, Kettleborough RN, Stemple DL, Yoder JA, Andrade J, and de Jong IL. (2016) Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution. PNAS 113(34): E5014-23.Link
Rodriguez-Nunez I, Wcisel DJ, Litman RT, Litman GW, and Yoder JA. (2016) The identification of additional zebrafish DICP genes reveals haplotype variation and linkage to MHC class I genes. Immunogenetics 68(4): 295-312.Link
Wcisel DJ and Yoder JA. (2016) The confounding complexity of innate immune recetpros within and between teleost species. Fish Shellfish Immunology 53: 24-34.Link
Saville AC, Martin MD, and Ristaino JB. (2016) Historic late blight outbreaks caused by a widespread dominant lineage of Phytophthora infestans (Mont.) de Bary. PLoS One 11(12): e0168381.Link
Ristaino JB and Pfister DH. (2016) "What a painfully interesting subject": Charles Darwin's studies of potato late blight. BioScience 66(12): 1035-1045.Link

 

Publications 2015Read More
Houck K, Thompson A, and Sorensen M. (2015) Exploring the effects of energy reserves in modifying tradeoffs between immunostimulation and growth in children from Galapagos, Ecuador. American Journal of Human Biology 27(2): 271.
Nunn CL, Alberts SC, McClain CR, Meshnick SR, Vision TJ, Wiegmann BM, and Rodrigo AG. (2015) Linking evolution, ecology, and health: TriCEM. BioScience 65(8): 748-9.Link